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最近の論文リスト

2009年

Yap ML, Mio K, Leiman PG, Kanamaru S, Arisaka F.
The Baseplate Wedges of Bacteriophage T4 Spontaneously Assemble into Hubless Baseplate-like Structure In Vitro.
J. Mol. Biol. (2010) 395, 349-360[PubMed]

Tsutomu Arakawa, Takako Niikura, Yoshiko Kita, Fumio Arisaka
Structure analysis of short peptides by analytical ultracentrifugation:Review
Drug Discov Ther. 2009; 3 (in press)

Koshiyama T, Ueno T, Kanamaru S, Arisaka F, Watanabe Y.
Construction of an energy transfer system in the bio-nanocup space by heteromeric assembly of gp27 and gp5 proteins isolated from bacteriophage T4.
Org Biomol Chem. 2009 Jun 21;7(12):2649-54.[PubMed]

Tsutomu Arakawa, Takako Niikura, Fumio Arisaka, Yoshiko Kita
Short neuroprotective peptides, ADNF9 and NAP, are structurally disordered in PBS.
Int. J. Biol. Macromol.2009 Jul 1;45(1):8-11.[PubMed]

Roberts AJ, Numata N, Walker ML, Kato YS, Malkova B, Kon T, Ohkura R, Arisaka F, Knight PJ, Sutoh K, Burgess SA.
AAA+ Ring and linker swing mechanism in the dynein motor.
Cell. 2009 Feb 6;136(3):485-95.[PubMed]

Arisaka F, Arakawa T, Niikura T, Kita Y.
Active form of neuroprotective Humanin, HN, and inactive analog, S7A-HN, are monomeric and disordered in aqueous phosphate solution at pH 6.0; No correlation of solution structure with activity.
Protein Pept Lett. 2009;16(2):132-7.[PubMed]

Sadaie M, Kawaguchi R, Ohtani Y, Arisaka F, Tanaka K, Shirahige K, Nakayama JI.
Balance between distinct HP1 proteins controls heterochromatin assembly in fission yeast.
Mol Cell Biol. 28(23):6973-6988 (2008)[PubMed]

Watanabe M, Tanaka Y, Suenaga A, Kuroda M, Yao M, Watanabe N, Arisaka F, Ohta T, Tanaka I, Tsumoto K.
Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third NEAT domain of IsdH from Staphylococcus aureus.
J. Biol. Chem. 283(42):28649-59 (2008)[PubMed]

Kita Y, Niikura T, Arisaka F, Arakawa T.
The complex structure transition of Humanin peptides by sodium dodecylsulfate and trifluoroethanol.
Protein Pept Lett. 2008;15(5):510-5. [PubMed]

Tokunaga H, Ishibashi M, Arisaka F, Arai S, Kuroki R, Arakawa T, Tokunaga M.
Residue 134 determines the dimer-tetramer assembly of nucleoside diphosphate kinase from moderately halophilic bacteria.
FEBS Lett. 2008 Apr 2;582(7):1049-54. Epub 2008 Mar 3.[PubMed]

Fumio Arisaka, Takako Niikura, Tsutomu Arakawa, Yoshiko Kita.
The structure analysis of Humanin analog, AGA-(C8R)HNG17, by circular dichroism and sedimentation equilibrium: comparison with the parent molecule.
Int J Biol Macromol. 43(2):88-93 (2008)

Nemoto M, Mio K, Kanamaru S, Arisaka F.
ORF334 in Vibrio phage KVP40 plays the role of gp27 in T4 phage to form a hetero-hexameric complex.
J Bacteriol. 190(10): 3606-3612 (2008)[PubMed]

Koshiyama T, Yokoi N, Ueno T, Kanamaru S, Nagano S, Shiro Y, Arisaka F, Watanabe Y.
Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor.
Small. 2008 Jan;4(1):50-4.[PubMed]

Absar N, Hasan S, Arisaka F.
Purification, Characterization and N-terminal Sequences Alignment of a Mannose Specific Protein Purified from Potca Fish, Tetraodon patoca.
Protein J. 27(2): 97-104 (2008)[PubMed]

Mio K, Kubo Y, Ogura T, Yamamoto T, Arisaka F, Sato C.
The motor protein prestin is a bullet-shaped molecule with inner cavities.
J.Biol.Chem. 283(2):1137-45 (2008)[PubMed]

Arakawa T, Niikura T, Arisaka F, Kita Y.
Activity-dependent neurotrophic factor, ADNF, determines the structure characteristics of Colivelin, a fusion protein of ADNF9 and Humanin analog.
J Pept Sci. 14(5):631-636 (2008)[PubMed]

Matsuda Y, Koshiba T, Osaki T, Suyama H, Arisaka F, Toh Y, Kawabata SI.
An arthropod cuticular chitin-binding protein endows injured sites with transglutaminase-dependent mesh.
J Biol Chem. 282(52):37316-24 (2007) [PubMed]

Tsutomu Arakawa, John S. Philo, Daisuke Ejima, Kouhei Tsumoto, and Fumio Arisaka
Aggregation Analysis of Therapeutic Proteins, Part 2 Analytical Ultracentrifugation and Dynamic Light Scattering
BioProcess International 5(4):36-50 (April 2007) [PDF]

Makino T, Morii H, Shimizu T, Arisaka F, Kato Y, Nagata K, Tanokura M.
Reversible and Irreversible Coiled Coils in the Stalk Domain of ncd Motor Protein.
Biochemistry. 2007 Aug 21;46(33):9523-9532. Epub 2007 Jul 27.[PubMed]

Akhter T, Zhao L, Kohda A, Mio K, Kanamaru S, Arisaka F.
The neck of bacteriophage T4 is a ring-like structure formed by a hetero-oligomer of gp13 and gp14.
Biochim Biophys Acta. 2007 Aug;1774(8):1036-43. Epub 2007 May 29. [PubMed]

Sano K, Asanuma-Date K, Arisaka F, Hattori S, Ogawa H.
Changes in glycosylation of vitronectin modulate multimerization and collagen binding during liver regeneration.
Glycobiology. 2007 Jul;17(7):784-94. [PubMed]

Abe M, Ohno S, Yokogawa T, Nakanishi T, Arisaka F, Hosoya T, Hiramatsu T, Suzuki M, Ogasawara T, Sawasaki T, Nishikawa K, Kitamura M, Hori H, Endo Y.
Detection of structural changes in a cofactor binding protein by using a wheat germ cell-free protein synthesis system coupled with unnatural amino acid probing.
Proteins. 2007 May 15;67(3):643-52. [PubMed]

Rossmann MG, Arisaka F, Battisti AJ, Bowman VD, Chipman PR, Fokine A, Hafenstein S, Kanamaru S, Kostyuchenko VA, Mesyanzhinov VV, Shneider MM, Morais MC, Leiman PG, Palermo LM, Parrish CR, Xiao C.
From structure of the complex to understanding of the biology.
Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):9-16. [PubMed]

Arakawa T, Niikura T, Tajima H, Arisaka F, Kita Y.
Structure Analysis of Activity-dependent Neurotrophic Factor 9 by Circular Dichroism and Sedimentation Equilibrium.
J Mol Neurosci. 2007;33(3):262-7. Epub 2007 May 31.[PubMed]

Hara S, Motohashi K, Arisaka F, Romano PG, Hosoya-Matsuda N, Kikuchi N, Fusada N, Hisabori T.
Thioredoxin-h1 reduces and reactivates the oxidized cytosolic malate dehydrogenase dimer in higher plants.
J Biol Chem. 2006 Oct 27;281(43):32065-71.　[PubMed]

Kumar Sarkar S, Takeda Y, Kanamaru S, Arisaka F.
Association and dissociation of the cell puncturing complex of bacteriophage T4 is controlled by both pH and temperature.
Biochim Biophys Acta. 2006 Sep;1764(9):1487-92.　 [PubMed]

Morimoto K, Yamashita E, Kondou Y, Lee SJ, Arisaka F, Tsukihara T, Nakai M.
The asymmetric IscA homodimer with an exposed [2Fe-2S] cluster suggests the structural basis of the Fe-S cluster biosynthetic scaffold.
J Mol Biol. 2006 Jun 30;360(1):117-32.　[PubMed]

Urano F, Hayashi N, Arisaka F, Kurita H, Murata S, Ichinose H.
Molecular mechanism for pterin-mediated inactivation of tyrosine hydroxylase: formation of insoluble aggregates of tyrosine hydroxylase.
J Biochem (Tokyo). 2006 Apr;139(4):625-35. [PubMed]

Arakawa T, Philo JS, Ejima D, Tsumoto K, Arisaka F
Aggregation Analysis of Therapeutic Proteins, Part 1 General Aspects and Techniques for Assessment
BioProcess International 4(10):42-43 (November 2006) [PDF]

2005年

Arisaka F.
Assembly and infection process of bacteriophage T4.
Chaos. 2005 Dec;15(4):047502. [PubMed]

Shimizu Y, Morii H, Arisaka F, Tanokura M.
Stalk region of kinesin-related protein Unc104 has moderate ability to form coiled-coil dimer.
Biochem Biophys Res Commun. 2005 Nov 25;337(3):868-74. [PubMed]

Kostyuchenko VA, Chipman PR, Leiman PG, Arisaka F, Mesyanzhinov VV, Rossmann MG.
The tail structure of bacteriophage T4 and its mechanism of contraction.
Nat Struct Mol Biol. 2005 Sep;12(9):810-3. [PubMed]

Absar N, Yeasmin T, Raza MS, Sarkar SK, Arisaka F.
Single step purification, characterization and N-terminal sequences of a mannose specific lectin from mulberry seeds.
Protein J. 2005 Aug;24(6):369-77. [PubMed]

Kanamaru S, Ishiwata Y, Suzuki T, Rossmann MG, Arisaka F.
Control of bacteriophage T4 tail lysozyme activity during the infection process.
J Mol Biol. 2005 Mar 4;346(4):1013-20. [PubMed]

Takeda S, Suzuki M, Yamada T, Kageyama M, Arisaka F.
Mapping of functional sites on the primary structure of the contractile tail sheath protein of bacteriophage T4 by mutation analysis.
Biochim Biophys Acta. 2004 Jun 1;1699(1-2):163-71. [PubMed]

Rossmann MG, Mesyanzhinov VV, Arisaka F, Leiman PG.
The bacteriophage T4 DNA injection machine.
Curr Opin Struct Biol. 2004 Apr;14(2):171-80. [PubMed]

Takahashi H, Inagaki E, Fujimoto Y, Kuroishi C, Nodake Y, Nakamura Y, Arisaka F, Yutani K, Kuramitsu S, Yokoyama S, Yamamoto M, Miyano M, Tahirov TH.
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus.
Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):97-104. [PubMed]

Abe M, Hori H, Nakanishi T, Arisaka F, Ogasawara T, Sawasaki T, Kitamura M, Endo Y.
Application of cell-free translation systems to studies of cofactor binding proteins.
Nucleic Acids Symp Ser (Oxf). 2004;(48):143-4. [PubMed]

Kanamaru S, Kondabagil K, Rossmann MG, Rao VB.
The functional domains of bacteriophage t4 terminase.
J Biol Chem. 2004 Sep 24;279(39):40795-801. [PubMed]

Myszka DG, Abdiche YN, Arisaka F, Byron O, Eisenstein E, Hensley P, Thomson JA, Lombardo CR, Schwarz F, Stafford W, Doyle ML.
The ABRF-MIRG'02 study: assembly state, thermodynamic, and kinetic analysis of an enzyme/inhibitor interaction.
J Biomol Tech. 2003 Dec;14(4):247-69. [PubMed]

Okabe M, Tomita K, Ishitani R, Ishii R, Takeuchi N, Arisaka F, Nureki O, Yokoyama S.
Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure.
EMBO J. 2003 Nov 3;22(21):5918-27. [PubMed]

Leiman PG, Kanamaru S, Mesyanzhinov VV, Arisaka F, Rossmann MG.
Structure and morphogenesis of bacteriophage T4.
Cell Mol Life Sci. 2003 Nov;60(11):2356-70. [PubMed]

Ali SA, Iwabuchi N, Matsui T, Hirota K, Kidokoro S, Arai M, Kuwajima K, Schuck P, Arisaka F.
Reversible and fast association equilibria of a molecular chaperone, gp57A, of bacteriophage T4.
Biophys J. 2003 Oct;85(4):2606-18. [PubMed]

Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG.
Three-dimensional structure of bacteriophage T4 baseplate.
Nat Struct Biol. 2003 Sep;10(9):688-93. [PubMed]

Zhao L, Kanamaru S, Chaidirek C, Arisaka F.
P15 and P3, the tail completion proteins of bacteriophage T4, both form hexameric rings.
J Bacteriol. 2003 Mar;185(5):1693-700. [PubMed]

Miller ES, Kutter E, Mosig G, Arisaka F, Kunisawa T, Ruger W.
Bacteriophage T4 genome.
Microbiol Mol Biol Rev. 2003 Mar;67(1):86-156. [PubMed]

Arisaka F, Kanamaru S, Leiman P, Rossmann MG.
The tail lysozyme complex of bacteriophage T4.
Int J Biochem Cell Biol. 2003 Jan;35(1):16-21. [PubMed]

Suzuki T, Yasugi M, Arisaka F, Oshima T, Yamagishi A.
Cold-adaptation mechanism of mutant enzymes of 3-isopropylmalate dehydrogenase from Thermus thermophilus.
Protein Eng. 2002 Jun;15(6):471-6. [PubMed]

Kanamaru S, Leiman PG, Kostyuchenko VA, Chipman PR, Mesyanzhinov VV, Arisaka F, Rossmann MG.
Structure of the cell-puncturing device of bacteriophage T4.
Nature. 2002 Jan 31;415(6871):553-7. [PubMed]

Suzuki T, Yasugi M, Arisaka F, Yamagishi A, Oshima T.
Adaptation of a thermophilic enzyme, 3-isopropylmalate dehydrogenase, to low temperatures.
Protein Eng. 2001 Feb;14(2):85-91. [PubMed]

Asanuma K, Arisaka F, Ogawa H.
Multimerization and collagen binding of vitronectin is modulated by its glycosylation.
Int. Congr. Ser. 2001 Dec;1223:97-101. [ScienceDirect]

Kawabata T, Arisaka F, Nishikawa K.
Structural/functional assignment of unknown bacteriophage T4 proteins by iterative database searches.
Gene. 2000 Dec 23;259(1-2):223-33. [PubMed]

Inoue S, Tanaka K, Arisaka F, Kimura S, Ohtomo K, Mizuno S.
Silk fibroin of Bombyx mori is secreted, assembling a high molecular mass elementary unit consisting of H-chain, L-chain, and P25, with a 6:6:1 molar ratio.
J Biol Chem. 2000 Dec 22;275(51):40517-28. [PubMed]

Zhao L, Takeda S, Leiman PG, Arisaka F.
Stoichiometry and inter-subunit interaction of the wedge initiation complex, gp10-gp11, of bacteriophage T4.
Biochim Biophys Acta. 2000 Jun 15;1479(1-2):286-92. [PubMed]

Hoque M, Shimizu N, Ishizu K, Yajima H, Arisaka F, Suzuki K, Watanabe H, Handa H.
Chimeric virus-like particle formation of adeno-associated virus.
Biochem Biophys Res Commun. 1999 Dec 20;266(2):371-6. [PubMed]

Hoque M, Ishizu K, Matsumoto A, Han SI, Arisaka F, Takayama M, Suzuki K, Kato K, Kanda T, Watanabe H, Handa H.
Nuclear transport of the major capsid protein is essential for adeno-associated virus capsid formation.
J Virol. 1999 Sep;73(9):7912-5. [PubMed]

Kanamaru S, Gassner NC, Ye N, Takeda S, Arisaka F.
The C-terminal fragment of the precursor tail lysozyme of bacteriophage T4 stays as a structural component of the baseplate after cleavage.
J Bacteriol. 1999 May;181(9):2739-44. [PubMed]

Inamori K, Saito T, Iwaki D, Nagira T, Iwanaga S, Arisaka F, Kawabata S.
A newly identified horseshoe crab lectin with specificity for blood group A antigen recognizes specific O-antigens of bacterial lipopolysaccharides.
J Biol Chem. 1999 Feb 5;274(6):3272-8. [PubMed]

Ushiyama M, Arisaka F, Yamamura T
Construction of a Multiple Porphyrin System Using a de novo Designed Peptide Porphyrin and Hemin
Chem. Lett. Vol.28 (1999), No.2 p.127 [J-STAGE]

Ushiyama M, Yoshino A, Yamamura T, Shida Y, Arisaka F.
A 12-Porphyrin System: Syntheses of Peptide Porphyrins with Multiple Histidines and the Aggregation Behavior in the Presence of Hemin.
Bull. Chem. Soc. Jpn. Vol.72 (1999), No.6 pp.1351-1364 [J-STAGE]

Takeda S, Sasaki T, Ritani A, Howe MM, Arisaka F.
Discovery of the tail tube gene of bacteriophage Mu and sequence analysis of the sheath and tube genes.
Biochim Biophys Acta. 1998 Jul 30;1399(1):88-92. [PubMed]

Takeda S, Hoshida K, Arisaka F.
Mapping of functional sites on the primary structure of the tail lysozyme of bacteriophage T4 by mutational analysis.
Biochim Biophys Acta. 1998 May 19;1384(2):243-52. [PubMed]

Matsui T, Griniuviene B, Goldberg E, Tsugita A, Tanaka N, Arisaka F.
Isolation and characterization of a molecular chaperone, gp57A, of bacteriophage T4.
J Bacteriol. 1997 Mar;179(6):1846-51. [PubMed]

Identification of kinesin neck region as a stable alpha-helical coiled coil and its thermodynamic characterization.
Biochemistry. 1997 Feb 18;36(7):1933-42. [PubMed]

Kojima S, Kuriki Y, Sato Y, Arisaka F, Kumagai I, Takahashi S, Miura K.
Synthesis of alpha-helix-forming peptides by gene engineering methods and their characterization by circular dichroism spectra measurements.
Biochim Biophys Acta. 1996 May 23;1294(2):129-37. [PubMed]

Kosukegawa A, Arisaka F, Takayama M, Yajima H, Kaidow A, Handa H.
Purification and characterization of virus-like particles and pentamers produced by the expression of SV40 capsid proteins in insect cells.
Biochim Biophys Acta. 1996 May 21;1290(1):37-45. [PubMed]

有坂文雄
溶液の挙動、長谷・高木・高尾編「タンパク質をみる―構造と挙動
(やさしい原理からはいるタンパク質科学実験法2)
pp.67-120化学同人(2009)

有坂文雄
東京工業大学大学院生命理工学研究科編「トコトンやさしいタンパク質の本」
pp.42-51, 56-57、日刊工業新聞社 (2007)

有坂文雄
超遠心分析による蛋白質間相互作用の解析
礒辺・中山・伊藤編「分子間相互作用解析ハンドブック」羊土社(2007))

金丸周司・有坂文雄
バクテリオファージの構造生物学
野本、西山編「ウイルス研究の現在と展望」
蛋白質核酸酵素　８月号増刊、
52(10): 1069-1074 (2007)

金丸周司・有坂文雄
ウイルスに見られる新しいβモチーフ
日本結晶学会誌 49:161-170 (2007)

有坂文雄
相互作用解析法−超遠心分析と表面プラスモン共鳴法
後藤・桑島・谷澤編「タンパク質科学」化学同人（2005）

金丸周司、有坂文雄
バクテリオファージの構造と感染機構
阿久津、月原、嶋田編「生命秩序を担う生体超分子」
蛋白質核酸酵素　８月号増刊、50(10):1341-1348 (2005)

有坂文雄
超遠心分析
小原、谷口、市川、猪飼編「バイオ高性能機器・新技術利用マニュアル」
蛋白質核酸酵素　８月号増刊 49(11):1660-1667 (2004)

有坂文雄
学会見聞記「第１回環太平洋蛋白質科学国際会議（PRICPS2004）」
蛋白質核酸酵素　１０月号 49(10):1444-1446 (2004)

有坂文雄
巻頭言「超遠心と構造生物学」
生物物理 44:55 (2004)

有坂文雄
超遠心分析
図解「バイオ活用技術のすべて」工業調査会 (2004)

金丸周司、有坂文雄
Ｔ４ファージの注射針複合体
生物物理 43:21-24 (2003)

金丸周司、Petr Leiman、有坂文雄
Ｔ４ファージ尾部基盤の構造解析と感染メカニズムの解明
結晶学会誌 45:48-53 (2003)

金丸周司、有坂文雄
Ｔ４ファージの構造生物学と感染のメカニズム
生化学 74(2):131-5 (2002)

有坂文雄
Ｔ４ファージの自己集合におけるシャペロンの機能
ウイルス 51:57-62 (2001) 日本ウイルス学会

小熊恵二、有坂文雄
バクテリオファージ
大里外誉郎編「医科ウイルス学」pp.48-62（第二版）４章Ｂ、南江堂 (2000)

有坂文雄
タンパク質の自己集合
長田義仁（編集代表）「バイオミメティックスハンドブック」第１章第６節 pp.70-86 (2000)

有坂文雄
超遠心分析の基礎と新たな展開(4)
蛋白質核酸酵素（1月号）44(1):82-94 (1999)

有坂文雄
超遠心分析の基礎と新たな展開(3)
蛋白質核酸酵素（12月号）43(15):2238-2244 (1998)

有坂文雄
超遠心分析の基礎と新たな展開(2)
蛋白質核酸酵素（11月号）43(14):2145-2152 (1998)

有坂文雄
超遠心分析の基礎と新たな展開(1)
蛋白質核酸酵素（10月号）43(13):2024-2032 (1998)

有坂文雄
超遠心分析
永田・半田編「生体物質相互作用のリアルタイム解析実験法」第９章２節 ｼｭﾌﾟﾘﾝｶﾞｰﾌｪｰﾗｰｸ東京社（1998）

武田茂樹、有坂文雄
ネガティブ染色---簡便で高分解能の染色法
細胞工学(1997.6月号）秀潤社

有坂文雄
Ｔ４ファージの構造と分子集合
畑中正一編「ウイルス学」（共著）第5章 朝倉書店（1997）

中村春木、有坂文雄編著
タンパク質のかたちと物性
ニューバイオフィジクスシリーズ第１巻（日本生物物理学会編）共立出版社（1997）

有坂文雄
「スタンダード生化学」裳華房 (1996)

有坂文雄
超遠心
蛋白質核酸酵素　臨時増刊号「最新高性能分離分析機器の導入」 吉田、谷口、杉浦編、39(11):38-60 (1994)

有坂文雄
蛋白質集合体の構造学
嶋本編「ナノバイオロジー入門」pp.109-129 (1994)、共立出版

有坂文雄
蛋白質間相互作用
「蛋白質の時代　構造・物性・機能研究の新局面」、Ｉ．構造・物性、郷、大島、油谷、猪飼編
蛋白質核酸酵素 39:1036-1051 (1994)

有坂文雄
核酸の電気泳動
「分離精製技術ハンドブック」日本化学会編、富永他編、丸善 pp.647-655 (1993)

有坂文雄
核酸の超遠心分離
「分離精製技術ハンドブック」日本化学会編、富永他編、丸善 pp.629-636 (1993)